| Section | Description | Example | |---------|-------------|---------| | [CIRCUIT] | Global circuit metadata | NAME = ToggleSwitch | | [CIRCUIT.COMPONENTS] | List of parts (ordered) | 1 = promoter: Ptet | | [CIRCUIT.INTERACTIONS] | Directed edges with logic | 1 = 2 : repression | | [PARTS.<ID>] | Metadata for a specific part | SEQUENCE = ATG… | | [SIMULATION] | Global simulation settings | TIME = 1000 | | [SIMULATION.INITIAL] | Initial concentrations | geneA = 10 nM |
# Windows (using the Ghostscript executable) gswin64c -dNOPAUSE -dBATCH -sDEVICE=pdfwrite -sOutputFile=sxy.pdf sxy.prn # macOS / Linux gs -dNOPAUSE -dBATCH -sDEVICE=pdfwrite -sOutputFile=sxy.pdf sxy.prn sxy.prn
We integrated sxy.prn with three tools: